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Results of BLAST searches for partial and full genomes and shorter contigs.

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Title:
Results of BLAST searches for partial and full genomes and shorter contigs.
Series Title:
BATS IN A CHANGING WORLD: WHERE THEY GO, WHAT THEY BRING, AND HOW THEY IMPACT PEOPLE
Creator:
Shapiro, Julie
Language:
English
Physical Description:
Dissertation

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Collected for University of Florida's Institutional Repository by the UFIR Self-Submittal tool. Submitted by Julie Shapiro.

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University of Florida Institutional Repository
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University of Florida
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Copyright Creator/Rights holder. Permission granted to University of Florida to digitize and display this item for non-profit research and educational purposes. Any reuse of this item in excess of fair use or other copyright exemptions requires permission of the copyright holder.

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Bat ID Contig number BLAST Scientific name Genus A ccession Reference length Percent ID Contig length Alignment length mismatch gapopen evalue bitscore qstart qend sstart send Description Bat143 Bat143_consensus BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 97.099 27956 8065 234 0 0 13490 12394 20458 1 8065 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat151 Bat151_consensus BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 97.185 28061 8065 227 0 0 13521 12500 20564 1 8065 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166 Bat166_contig 10056000009 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 99.744 391 391 1 0 0 700 1 391 13651 13261 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 11000007 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 95.462 595 595 27 0 0 951 1 595 4430 3836 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 129000001 BLASTn BtRf AlphaCoV/HuB2013 Alphacoronavirus KJ473807.1 27608 72.682 632 604 161 4 1.77E 86 331 1 602 8890 8289 BtRf AlphaCoV/HuB2013, complete genome Bat166_contig 14000005 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 98.3 1355 1353 23 0 0 2336 1 1353 14128 15480 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, com plete cds Bat166_contig 17000010 BLASTn BtRf AlphaCoV/HuB2013 Alphacoronavirus KJ473807.1 27608 76.834 1640 1636 365 5 0 1232 11 1639 10395 12023 BtRf AlphaCoV/HuB2013, complete genome Bat166_contig 171000002 BLASTn BtMs AlphaCoV/GS2013 Alphacoronavirus KJ473810.1 27576 71.809 249 188 53 0 1.95E 17 100 57 244 9924 9737 BtMs AlphaCoV/GS2013, complete genome Bat166_contig 18666000001 BLASTn Bat coronavirus Unclassified KY770851.1 28096 66.42 483 405 128 4 2.75E 19 107 86 483 822 419 Bat coronavirus isolate Anlong 57, complete genome Bat166_contig 19000006 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 97.08 959 959 28 0 0 1604 1 959 6727 5769 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 21000007 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 98.503 1274 1269 19 0 0 2203 5 1273 3357 2089 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 22000001 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 96.966 725 725 22 0 0 1209 1 725 3846 3122 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 26000003 BLASTn Feline coronavirus Alphacoronavirus KP143507.1 28984 72.973 1645 148 40 0 9.27E 13 87.8 675 822 21729 21582 Feline coronavirus isolate 27C, complete genome Bat166_contig 30000009 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 98.392 1244 1244 20 0 0 2154 1 1244 5676 4433 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORF x) genes, complete cds Bat166_contig 30000012 BLASTx BtMs AlphaCoV/GS2013 Alphacoronavirus AIA62270.1 6740 51.799 414 139 64 2 1.45E 28 119 412 2 3321 3458 ORF1ab polyprotein [BtMs AlphaCoV/GS2013] Bat166_contig 3000002 BLASTn BtRf AlphaCoV /HuB2013 Alphacoronavirus KJ473807.1 27608 68.75 4121 1296 376 12 ####### 484 2842 4121 5709 6991 BtRf AlphaCoV/HuB2013, complete genome Bat166_contig 41058000008 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 97.836 1063 1063 23 0 0 1813 1 1063 1999 937 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetic al protein ORFx (ORFx) genes, complete cds Bat166_contig 42000006 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 85.673 354 349 50 0 ####### 405 1 349 12287 11939 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 47628000001 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 96.411 420 418 12 1 0 684 1 418 13035 12621 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 52000000 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 75.478 1208 1203 286 3 0 834 10 1206 10662 11861 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 54915000008 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 96.284 296 296 11 0 ####### 484 1 296 12605 12310 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 5742000003 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 72.816 287 206 56 0 2.45E 23 120 9 214 10547 10342 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 62000008 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 97.498 1921 1439 36 0 0 2434 483 1921 8055 6617 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat166_contig 72000000 BLASTn BtRf AlphaCoV/HuB2013 Alphacoronavirus KJ473807.1 27608 66.882 1555 465 142 7 1.22E 23 123 206 664 2951 2493 BtRf AlphaCoV/HuB2013, complete genome Bat166_contig 93000000 BLASTn BtRf AlphaCoV/HuB2013 Alphacoronavirus KJ473807.1 27608 74.392 729 699 179 0 ####### 453 2 700 8871 9569 BtRf AlphaCoV/HuB2013, complete genome Bat166_contig 9974000012 BLASTn Rousettus bat coronavirus HKU10 Alphacoronavirus JQ989270.1 28494 69.63 548 405 123 0 7.41E 40 176 83 487 8265 8669 Rousettus bat coronavirus HKU10 isolate 183A, complete genome Bat167 Bat167_contig 1582000012 BLASTx Scotophilus bat coronavirus 512 Alphacoronavirus P0C6F6.1 4128 85.294 106 34 5 0 2.37E 11 64.7 106 5 2659 2692 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName : Full=Non structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non structural protein 3; Short=nsp3; AltName: Full=PL1 PRO/PL2 PRO; AltName: Full=PLP1/ PLP2; AltName: Full=Papain like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C like proteinase; Short=3CL PRO; Short=3CLp; AltName: Full=M PRO; AltNam e: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non

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structural protein 6; Short=nsp6; Contains: RecName: Full=Non structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non structural protein 10; Short=nsp10; AltName: Full=Growth factor like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non structural protein 11; Short=nsp11 Bat167_contig 1644000014 BLASTn Scotophilus bat coronavirus 512 Alphacoronavirus DQ648858.1 28203 90.476 111 84 8 0 9.05E 23 116 7 90 20594 20677 Bat coronavirus (BtCoV /512/2005) ORF1, spike protein, putative ORF3, envelope protein, matrix protein, and nucleocapsid protein genes, complete cds Bat167_contig 1768000008 BLASTn Scotophilus bat coronavirus 512 Alphacoronavirus DQ648858.1 28203 88 103 100 12 0 4.48E 26 127 3 102 17111 17210 Bat coronavirus (BtCoV/512/2005) ORF1, spike protein, putative ORF3, envelope protein, matrix protein, and nucleocapsid protein genes, complete cds Bat167_contig 864000009 BLASTn Scotophilus bat coronavirus 512 Alphacoronavirus DQ648858.1 28203 76.724 148 116 27 0 6.53E 14 87.8 33 148 819 934 Bat coronavirus (BtCoV/512/2005) ORF1, spike protein, putative ORF3, envelope protein, matrix protein, and nucleocapsid protein genes, complete cds Bat180 Bat180_contig 10047000013 BLASTx Scotophilus bat coronavirus 512 Alphacoronavirus YP_0013516 83.1 6793 61.111 110 36 14 0 4.02E 08 55.8 110 3 2117 2152 ORF1 [Scotophilus bat coronavirus 512] Bat180_contig 10671000011 BLASTn Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus HQ728486.1 15480 96.358 20826 8265 289 3 0 13546 5293 13557 1 8253 Chaerephon bat coronavirus/Kenya/KY22/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and hypothetical protein ORFx (ORFx) genes, complete cds Bat180_contig 10775000003 BLASTn Hipposideros bat coronavirus HKU10 Alphacoronavirus JQ989266.1 28483 65.282 5241 1829 578 35 5.41E 85 329 4 1805 7162 5364 Hipposideros bat coronavirus HKU10 isolate TT3A, complete genome Bat180_contig 26000004 BLASTx Chaerephon bat coronavirus/Kenya/KY22/2006 Alphacoronavirus ADX59495.1 1356 47.445 455 137 70 2 9.23E 26 111 48 455 16 151 spike protein [Chaerephon bat coronavirus/Kenya/KY22/2006] Bat180_contig 3000003 BLASTn Rousettus bat coronavirus HKU10 Alphacoronavirus JQ989271.1 28489 65.851 1138 1063 332 22 7.73E 50 210 83 1128 1100 52 Rousettus bat coronavirus HKU10 isolate 175A, complete genome Bat180_contig 8224000014 BLASTn BtMr AlphaCoV/SAX2011 Alphacoronavirus KJ473806.1 27935 75.63 145 119 29 0 7.75E 13 84.2 13 131 8379 8261 BtMr AlphaCoV /SAX2011, complete genome Bat180_contig 9000011 BLASTx BtMs AlphaCoV/GS2013 Alphacoronavirus AIA62270.1 6740 49.11 879 281 138 4 2.12E 73 254 840 1 275 551 ORF1ab polyprotein [BtMs AlphaCoV/GS2013] Bat50 Bat50_contig 10076000010 BLASTn Bat coronavirus HKU9 2 Betacoronavirus EF065514.1 29107 82.639 144 144 25 0 7.67E 32 147 1 144 14443 14300 Bat coronavirus HKU9 2, complete genome Bat50_contig 11237000003 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 85.106 141 141 21 0 1.18E 35 159 1 141 4654 4794 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 1145000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 89.714 309 175 17 1 5.85E 57 232 33 206 16111 15937 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORF y (ORFy) genes, complete cds Bat50_contig 12807000000 BLASTn Rousettus bat coronavirus Unclassified KU762338.1 30161 75.439 235 171 40 1 2.37E 22 116 3 171 9339 9169 Rousettus bat coronavirus isolate GCCDC1 356, complete genome Bat50_contig 13245000009 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 80.658 243 243 47 0 1.89E 55 226 1 243 10931 11173 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 14405000002 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 80.741 137 135 26 0 6.72E 26 127 3 137 7389 7523 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 16349000004 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 83.607 135 122 20 0 5.41E 27 131 12 133 3579 3700 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 17271000005 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 80.46 133 87 17 0 8.41E 12 80.6 47 133 9909 9995 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 1775000003 BLASTx Bat coronavirus HKU9 5 1 Betacoronavirus ADM33557.1 6923 59.649 172 57 23 0 1.39E 16 80.9 2 172 2081 2137 orf1ab polyprotein [Bat coronavirus HKU9 5 1] Bat50_contig 23015000002 BLASTx Rousettus bat coronavirus HKU9 Betacoronavirus P0C6T6.1 4248 50 128 42 21 0 6.23E 07 52.8 128 3 1510 1551 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non structural pr otein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non structural protein 3; Short=nsp3; AltName: Full=PL2 PRO; AltName: Full=Papain like proteinase; Short=PL PRO; Contains: RecName: Full=Non structural protein 4; Short=nsp4; Contains: RecName: Full=3C like proteinase; Short=3CL PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non structural protein 6; Short=nsp6; Contains: RecName: Full=Non structural protein 7; Short=nsp7; Contains: RecName: Full=Non structural protein 8; Short=nsp8; Contains: RecName: Full=Non structural protein 9; Short=nsp9; Contains: RecName: Full=Non structural protein 10; Short=nsp10; AltName: Full=Growth factor like peptide; Short=GFL; Contains: RecName: Full=Non structural protein 11; Short=nsp11 Bat50_contig 25333000002 BLASTx Rousettus bat coronavirus Unclassified AOG30811.1 6973 80.952 126 42 8 0 4.06E 17 81.6 126 1 3404 3445 ORF1ab [Rousettus bat coronavirus] Bat50_contig 26912000009 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 85 183 180 27 0 1.53E 48 203 4 183 2871 3050 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 2747000000 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 87.952 166 166 20 0 9.14E 51 210 1 166 954 789 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid

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protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50 Bat50_contig 4553000007 BLASTn Bat coronavirus HKU9 3 Betacoronavirus EF065515.1 29136 72.109 158 147 41 0 1.05E 11 80.6 3 149 5293 5439 Bat coronavirus HKU9 3, complete genome Bat50_contig 51241000008 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 92.523 110 107 8 0 2.92E 35 158 1 107 1299 1405 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical p rotein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 53375000010 BLASTx Bat coronavirus HKU9 4 Betacoronavirus ABN10934.1 6925 88.235 145 34 4 0 3.31E 11 65.1 37 138 1892 1925 orf1ab polyprotein [Bat coronavirus HKU9 4] Bat50_contig 5414000012 BLASTx Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus ADX59466.1 1264 68.627 155 51 16 0 1.38E 11 66.6 154 2 474 524 spike protein [Eidolon bat coronavirus/Kenya/KY24/2006] Bat50_contig 5417000003 BLASTx Bat coronavirus HKU9 2 Betacoronavirus ABN10918.1 6903 71.429 155 49 14 0 4.17E 16 79.3 147 1 3969 4017 orf1ab polyprotein [Bat coronavirus HKU9 2] Bat50_contig 56922000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 85.981 108 107 15 0 1.68E 25 125 2 108 2857 2751 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_contig 57954000000 BLASTn Bat coronavirus HKU9 1 Betacoronavirus EF065513.1 29114 78.947 107 95 11 3 7.52E 11 77 1 92 2574 2486 Bat coronavirus HKU9 1, complete genome Bat50_contig 6026000004 BLASTx Bat coronavirus HKU9 3 Betacoronavirus ABN10926.1 6923 58.824 153 51 21 0 4.08E 14 73.6 1 153 1444 1494 orf1ab polyprotein [Bat coronavirus HKU9 3] Bat50_contig 6142000009 BLASTx Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus ADX59467.1 238 77.358 159 53 12 0 3.45E 19 85.5 159 1 179 231 ORF3 protein [Eidolon bat coronavirus/Kenya/KY24/2006] Bat50_contig 63851000009 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 82.022 105 89 16 0 1.16E 14 89.7 15 103 13905 13817 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORF y (ORFy) genes, complete cds Bat50_contig 77256000006 BLASTx Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus ADX59466.1 1264 63.492 191 63 21 1 1.12E 16 81.6 191 3 63 123 spike protein [Eidolon bat coronavirus/Kenya/KY24/2006] Bat50_contig 9193000001 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 77.143 145 140 32 0 1.95E 20 109 6 145 11336 11197 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 121959000010 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 88.024 168 167 20 0 2.66E 51 212 1 167 955 789 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 132946000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 84.865 192 185 28 0 3.83E 50 208 6 190 10489 10673 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 18248000010 BLASTn Bat coronavirus HKU9 2 Betacoronavirus EF065514.1 29107 84.112 218 214 34 0 1.12E 57 233 2 215 14299 14512 Bat coronavirus HKU9 2, complete genome Bat50_Reseq_conti g 195000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 78.101 517 516 113 0 ####### 421 2 517 10924 11439 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 21316000003 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 85.106 141 141 21 0 1.18E 35 159 1 141 4654 4794 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 2376000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 85.774 392 239 30 4 1.29E 66 264 1 236 16174 15937 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 32485000007 BLASTn Bat betacoronavirus Betacoronavirus KU131215.1 2258 85.424 298 295 43 0 5.24E 89 338 4 298 1568 1274 Bat betacoronavirus isolate 13RS452 71 polyprotein (ORF1ab) gene, partial cds Bat50_Reseq_conti g 39871000010 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 88.732 132 71 7 1 1.61E 14 89.7 5 74 7994 8064 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 57397000002 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 84.595 386 383 59 0 ####### 425 4 386 2671 3053 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 66919000013 BLASTn Kenya bat coronavirus BtKY55 Unclassified GU065399.1 417 98.446 193 193 3 0 3.84E 88 334 1 193 41 233 Kenya bat coronavirus BtKY55 RNA dependent RNA polymerase gene, partial cds Bat50_Reseq_conti g 84474000010 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 76.042 220 192 46 0 1.92E 29 140 27 218 14671 14480 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat50_Reseq_conti g 96175000002 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 82.381 214 210 37 0 3.58E 51 212 5 214 12876 13085 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat76 Bat76_contig 1006000009 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 82.456 122 114 20 0 1.04E 22 116 8 121 14267 14380 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds ; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid

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protein (N), hypothetical protein ORFx (ORFx), and hypothetical protein ORFy (ORFy) genes, complete cds Bat76 Bat76_contig 1270000006 BLASTx Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus ADX59473.1 2687 76.471 106 34 8 0 1.13E 09 60.1 3 104 2152 2185 polyprotein, partial [Eidolon bat coronavirus/Kenya/KY24/2006] Bat76_contig 130000005 BLASTn Bat coronavirus HKU9 3 Betacoronavirus EF065515.1 29136 82.353 176 170 28 2 3.67E 37 165 7 175 13033 12865 Bat coronavirus HKU9 3, complete genome Bat76_contig 213000012 BLASTn Eidolon bat coronavirus/Kenya/KY24/2006 Betacoronavirus HQ728482.1 16186 72.109 167 147 41 0 1.12E 11 80.6 21 167 10418 10272 Eidolon bat coronavirus/Kenya/KY24/2006 polyprotein (ORF1ab) gene, partial cds; and spike protein (S), ORF3 protein (ORF3), envelope protein (E), membrane protein (M), nucleocapsid protein (N), hypothetical protein ORFx (ORFx), and hypothet ical protein ORFy (ORFy) genes, complete cds Bat76_contig 611000006 BLASTn Bat coronavirus HKU9 2 Betacoronavirus EF065514.1 29107 75.385 140 130 32 0 4.98E 15 91.5 1 130 11843 11972 Bat coronavirus HKU9 2, complete genome Bat76_contig 845000005 BLASTn Bat coronavirus HKU9 2 Betacoronavirus EF065514.1 29107 83.465 127 127 21 0 4.08E 28 134 1 127 14295 14421 Bat coronavirus HKU9 2, complete genome Bat77 Bat77_consensus BLASTn BtNv AlphaCoV/SC2013 Alphacoronavirus KJ473809.1 27783 78.067 26977 15748 3360 49 0 12691 4056 19765 4297 19988 BtNv AlphaCoV/SC2013, complete genome