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Health Informatics for Clinical and Translational Science: The University of Florida Experience
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Permanent Link: http://ufdc.ufl.edu/IR00000706/00001
 Material Information
Title: Health Informatics for Clinical and Translational Science: The University of Florida Experience
Physical Description: Presentation slides
Creator: Conlon, Michael
Publisher: University of Florida
Place of Publication: Sacramento, CA
Publication Date: December 5, 2011
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Acquisition: Collected for University of Florida's Institutional Repository by the UFIR Self-Submittal tool. Submitted by Michael Conlon.
Publication Status: Published
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Source Institution: University of Florida Institutional Repository
Holding Location: University of Florida
Rights Management: All rights reserved by the submitter.
System ID: IR00000706:00001

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Health Informatics for Clinical and Translational Science: The University of Florida Experience Mike Conlon, PhD Director, Biomedical Informatics Chief Operating Officer, UF CTSI University of Florida The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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T he University of Florida The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 50,116 students Gainesville, FL 2200 ac campus Gatorade 16 colleges Land grant, sea grant, space grant, academic health center ARWU #68 $750M in research construction 2010 Research funding $678M

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UF Research Funding The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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The UF&Shands Academic Health Center The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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The UF CTSI In July of 2009, UF received a $26 million, five year, NIH Clinical and Translational Science Award supporting the UF Clinical and Translational Science Institute (UF CTSI) The UF Office of Research has provided an additional $23 million in support The UF College of Medicine has made $70 million in additional commitments All 16 UF colleges effort for students, staff, faculty, space, equipment conduct clinical and translational science increasing research capacity, speeding results to application, improving care and human health The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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National Consortium of 60 Academic Health Centers The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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A Catalyst for Collaboration UF CTSI CTSA consortium 16 UF Colleges Health Care Systems Community Partners University Partners Corporate Partners The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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UF CTSI Organization The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Biomedical Informatics Overarching Goal Develop and integrate clinical and research data systems to support collaborative CTS and lay groundwork for new academic program in BMI Specific Aims 1. Build/delivery core informatics capabilities portal, study registry, investigator registry, data registry, sample registry 2. Build/delivery integrated data repository for research and clinical care 3. Create academic program The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 Michael Conlon, PhD

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Informatics Projects CTSI Portal rebuilt. 182 pages, 284 news stories. Daily posts. REDCap, Education and Research Services are top pages REDCap infrastructure, service. 467 users. 74 databases. 16,884 forms entered Study Registry. All human subject research at UF. 2008 11. 2735 studies coded with a goal of 8234. Integrated Data Repository. Comprehensive, enterprise systems and processes for quality reporting and research. I2b2, honest broker CTSI Biorepository. OnCore BMS. Integrate automated freezer controls Biositemaps UF #1 in described research resources Click Commerce for IRB CTSI tracking systems help desk, vouchers, billing, analytic dashboard Budgeting tool for clinical services VIVO. International project in research discovery CTSA IP database with U Rochester Replace CRC legacy applications Health Record Bank for Alachua County Portal process map for clinical research Health Impacts for Florida PBRN portal, ShareCenter REDCap, custom databases Consent for Research Contact and Use of Tissue. With UF & Shands, IRB. Improving protocol submission process Personalized Medicine genetics repository, IDR, alerts in Epic

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UF CTSI Portal

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CTSI Portal 4 month project to rebuild an existing portal 2 months of information architecture. Collaboration with UF&Shands campus IT. 8 person team 1 month of implementation, editing. WordPress Shibboleth. 174 pages, 269 news stories, 52 writers and editors. 6 member core group One month of testing, finishing. Launched January 2011. Content maintained by Asst Dir for Communications, CTSI w/ student assistant Infrastructure maintained by UF&Shands IT The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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REDCap The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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REDCap Implementation and Support REDCap researcher support team Doug Theriaque (CRC informatics), two assistants Shibboleth authentication. UF developed methods provided to the REDCap consortium Infrastructure maintained by UF&Shands IT Software maintained by REDCap support team The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Health IMPACTS for Florida The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 Goal: Create new opportunities for practicing physicians, clinical scientists, students, and the citizens of Florida to collaborate in advancing research and education into the causes, prevention, diagnosis, treatment and cure of human disease.

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Health IMPACTS portal

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Developing Health IMPACTS Grant from the State of Florida, CTSA Supplement grant from the NIH Major development effort to integrate WordPress REDCap ShareCenter custom databases, other software, Sakai. iPad clinic based data collection Infrastructure support by UF&Shands IT under contract from UF CTSI The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Study Registry Create a comprehensive database of all human subject research at UF. 2008 current Hand collect/classify data from our 4 IRBs Develop data maintenance processes for four IRBs to provide data going forward Create an on line participant opportunities site to support enrollment 2,246 studies coded On going work to collect additional 6,333 studies Review 195 studies with investigators. Launch in December The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Human Subject Studies at UF The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 IRBs Health Ctr Campus Jacksonville Western Total 2011 ( est ) 695 1217 182 144 2238 2010 683 1170 171 141 2165 2009 687 1205 161 124 2177 2008 647 1059 153 150 2009 Total 2712 4651 667 559 8589 Working with each IRB, the UF CTSI team hand codes each study for 34 attributes including T1 T4 research, keywords, lay description, PI and department information.

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VIVO: Enabling National Networking of Scientists NIH funded effort to create an open semantic network of information and tools regarding scientists, their interests, activities and accomplishments Seven school development consortium led by UF Fifty additional implementations underway. Dozens of partners Find people, grants, papers, data, concepts, resources, events, data, studies, projects within and across institutions http://vivoweb.org The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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VIVO: Enabling National Networking of Scientists 3 software releases. Version 1.4 coming in December. Adoption by USDA (120,000 + land grants), APA (154,000), 50 US schools, 20 international (8 Australia) Six mini grants Pitt, Duke, Leicester, Weill, Indiana, Stony Brook 14 schools at Implementation Fest, June 23 24. 30 others in various stages of implementation. 50 total. Second annual conference, Wash DC, August 24 26. 260 attendees 15,000 downloads of software. 1600 members on contact list Sustainability additional grants, 501C3, open source community Collaboration with Eagle I, HSDB, ORCID, SciENCV Linked Data Partnerships with federal agencies, publishers, schools, associations, companies, EU efforts

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Integrated Data Repository Collaborative, large scale effort to construct a comprehensive, secure data warehouse for quality reporting and research. Data from Epic and other clinical systems Proof of Concept with Recombinant Data implementing i2b2 completed June 30, 2011. 50 million facts. UF CTSI funded two pilot awards in cohort identification for clinical study planning Seminars, department presentations Participation of UF & Shands IT, IRB, Compliance, Privacy, CTSI, colleges, other centers Related projects in consent, biorepository Developing roadmap for on going work

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CTSI Funded IDR Pilot Projects Database Communication enables Machine Learning Classifiers to predict Perioperative Acute Kidney Injury Azra Bihorac MD, Department of Anesthesiology Mark Segal, MD, Division of Nephrology, Hypertension and Transplantation, Department of Medicine Comorbidity indices and disability: Targeting recruitment impairment & Identification of iatrogenic mobility impairments Susan Nayfield MD, MSc Institute on Aging Todd Manini PhD, Institute on Aging

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Clinical Translation in Pharmacogenomics The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 Clopidogrel ( Plavix ): genetic polymorphism of CYP2C19 leads to reduced ability to activate clopidigrel and increased risk of cardiovascular complication consenting; Bioethics; Communications Research Biorepository Genotyping Core Integrated Data Repository; Bioinformatics; Research IT Biomedical Informatics; Hospital IT; Epic Cardiovascular CRU; Comparative Effectiveness Research

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Personalized Medicine Program Data Trail Clopidogrel Pilot The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Informatics for Personalized Medicine Project Steering Committee Personalized Medicine Program Manager Informatics Project Manager Bioinformatics Lead Path Lab Lead Integrated Data Repository Lead Clinical Systems Lead 24 hour turn around time from sample to alert First patients: April 2012 The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889

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Improving Protocol Submission Single research price list Simple confirmation of service Applies to all clinical studies using Shands services Click Commerce for IRB On line protocol submission Simplified process Budgeting tool Simplified clinical trial budget creation based on current service rates The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 0 20 40 60 80 100 120 140 160 180 200 Year 0 (2008) Year 1 (2009) Year 2 (2010) Year 3 (2011) Protocol Preparation 45 35 30 30 Confirmation of Service Pricing 75 75 20 10 Approval by SAC 45 25 25 20 Approval by RAC 0 10 7 5 Approval by IRB 28 28 28 28 Number of Days Protocol Development and Approval Time

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BMI Academic Program Lecture Series Third academic year for full series mixing invited speakers with UF faculty. Organized two seminars on IDR. Faculty meetings Monthly series. Fourteen faculty from across UF departments and colleges. Build community of informaticians. Identify opportunities of interest Office

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BMIP Year 4 BMI Academic Program. Faculty affiliations, hires. Training program. Comprehensive enterprise architecture for research informatics Personalized Medicine. Sample collection, bioinformatics, IDR, EHR VIVO. Open source community. i2b2. Continue growth Health IMPACTS. iPad /REDCap data collection. Network portal Research Participant Registry. In IDR Genetic Data repository. In IDR Data registry. In IDR Specimen registry from biorepository. In IDR Consent data. In IDR Conversion of legacy applications eDSMB eAERS CRC scheduling CTSI Service Delivery systems ticketing, vouchers, billing, reporting

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Clinical and Translational Research Building The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889 CTSI headquarters Ambulatory Clinical Research Center and targeted research programs Biostatistics, BMI, Epidemiology, and Health Policy Training Programs (pre and post doctoral) 80,000 ft 2 dedicated space Incorporated with Institute of Aging (NIH funded; 40,000 ft 2 ) February 2013

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For More Information On the web www.ctsi.ufl.edu Call 352 273 8700 Email info@ctsi.ufl.edu The UF CTSI is supported in part by NIH awards UL1 RR029890, KL2 RR029888 and TL1 RR029889