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VIVO: Collaboration and Connections for Research Discovery and Scholarship
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Permanent Link: http://ufdc.ufl.edu/IR00000608/00001
 Material Information
Title: VIVO: Collaboration and Connections for Research Discovery and Scholarship
Physical Description: Conference Presentation
Creator: Conlon, Michael
Publisher: University of Florida
Place of Publication: Raleigh, NC
Publication Date: October 2, 2011
 Notes
Acquisition: Collected for University of Florida's Institutional Repository by the UFIR Self-Submittal tool. Submitted by Michael Conlon.
 Record Information
Source Institution: University of Florida Institutional Repository
Holding Location: University of Florida
Rights Management: All rights reserved by the submitter.
System ID: IR00000608:00001

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VIVO: Collaboration and Connections for Research Discovery and Scholarship Mike Conlon, University of Florida Kristi Holmes, Washington University, St. Louis Michele Tennant, University of Florida

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Public, structured linked data about investigators interests, activities and accomplishments, and tools to use that data to advance science

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What is VIVO? VIVO is open standards and linked open data regarding research and scholarship people, papers/products, funding, events, resources, projects, data, concepts and the relationships between them VIVO is open source, community maintained software tools for research discovery and networking VIVO is a world community of collaborators scientists, implementers, developers

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Information is stored using the Resource Description Framework (RDF) as subject predicate object Jane Smith professor in author of has affiliation with Dept. of Genetics College of Medicine Journal article Book chapter Book Genetics Institute Subject Predicate Object How does VIVO store data?

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Semantic Web Resource Description Framework (RDF) W3C standard for representing triples. RDF Schema (RDFS) descriptions for ontologies OWL Web Ontology Language Semantic Web for the Working Ontologist Second Edition: Effective Modeling in RDFS and OWL, Dean Allemang James Hendler, 2011 One or more ontologies for representing information Sets of triples SPARQL a query language for RDF

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VIVO and the Semantic Web VIVO is a semantic web application VIVO stores its data in triples All triples have URIs for each element All data is available via RDF The VIVO ontology is available here http://vivoweb.org/ontology/core VIVO contains an ontology editor VIVO provides a data harvester VIVO provides a SPARQL endpoint

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them

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Providing Data

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Linked Open Data September 2011

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Providing Open Linked Data VIVO version 1.3 completed. Includes spreadsheet upload. Google Refine. Harvester Fifty US schools adopting VIVO Harvard Profiles (30 sites) providing data using VIVO ontology and RDF SciVal experts (20 sites) working to provide VIVO ontology based RDF American Psychological Association adopts VIVO for its 154,000 members USDA adopts VIVO. 40,000 scientists, 80,000 staff, 50 land grant universities CTSA Consortium to propose VIVO ontology and RDF as a consortium wide standard University of Rochester to provide CTSA IP as VIVO data Eagle I and VIVO working to produce common ontology via RDF ORCID, Community of Science, Federal Researcher Profile System plan interchange with VIVO Stony Brook producing UMLS concept linkages to VIVO profiles Indiana provides HubZero profiles (3,000) via VIVO. Iowa Loki profiles (1,000) via VIVO. Adoptions in Mexico, Costa Rica, Puerto Rico, India, China, UK, Netherlands, Brazil Eight major Australian research universities and Australian federal research adopt VIVO Thomson Reuters and Elsevier providing data to VIVO Wellspring offering individual VIVO profiles Wellspring, Elsevier, Symplectics offering VIVO implementation services

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Data, Tools and Community Linked Open Data in a common format, regardless of the system providing data Web based applications provide services for discovery and scholarship

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processOrg < function( uri ){ x< xmlParse ( uri ) u< NULL name< xmlValue ( getNodeSet (x,"// rdfs:label ")[[1]] ) subs< getNodeSet (x,"//j.1:hasSubOrganization") if(length(subs)==0) list(name= name,subs =NULL) else { for( i in 1:length(subs)){ sub.uri< getURI ( xmlAttrs (subs[[ i ]])["resource"]) u< c( u,processOrg (sub.uri)) } list(name= name,subs =u) } } VIVO produces both HTML and RDF Software reads RDF from VIVO and displays

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Research Discovery and Scholarship Tools Duke web site plug ins OpenSocial Drupal, WordPress for using VIVO data Digital Enterprise Research Institute analytics for VIVO data UCSF Harvard visualize publication collaboration patterns Northwestern C IKnow Recommender for team building Pittsburgh Digital Vita produce vita and biosketches Weill Google Refine for VIVO data Stony Brook mapping people to UMLS concepts APA -identity management CTSA consortium NIH reporting Community of Science use VIVO data for faculty interests, route opportunities to faculty Federal Researcher Profile System avoid duplication of entry, simplify administration OpenPHACTS provide provenance for assertions regarding pharmaceutical compounds National Research Networking visualization show data sources and inventory of data

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The VIVO Community http://vivoweb.org http://vivo.sourceforge.net

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China

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Building Community Federal agencies OSTP NIH, NLM, NSF, USDA, FDP, EPA, FRPS STAR Publishers and Aggregators Elsevier, Thomson Reuters, ORCID, CiteSeer Arxiv Plos DSpace Symplectics Professional Societies International collaborators Ireland, Germany, Australia, China, Netherlands, UK, Costa Rica, Iceland, Brazil, Mexico, Semantic Web community DERI, Tim Berners Lee Jim Hendler, MyExperiment ConceptWeb Open Phacts Ontology OBO, NBIC, Eagle I BRO, eBIRT Open Source cooperatives Kuali Sakai, Duraspace Social Network Analysis Community Schools and Consortia CTSAs, Pitt Stony Brook, Duke, Weill, Indiana, Emory Iowa, Harvard, Rochester, UCSF Stanford, MIT, Brown, Michigan, Nebraska, Colorado, Hunter OHSU, Minnesota, Four annual events conference, workshop, hackathon implementation fest Over 10,000 downloads, over 1,600 participants on distribution list

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VIVO 2012, August 22 24, Hotel Intercontinental, Miami, Florida

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Thank you! The VIVO Team 2011


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