VIVO: Data, Tools and Community for Research Discovery
www.ufl.edu ( Publisher's URL )
CITATION DOWNLOADS PDF VIEWER
Full Citation
STANDARD VIEW MARC VIEW
Permanent Link: http://ufdc.ufl.edu/IR00000580/00001
 Material Information
Title: VIVO: Data, Tools and Community for Research Discovery
Physical Description: Conference Presentation
Creator: Conlon, Michael
Publisher: University of Florida
Place of Publication: Palo Alto, CA
Publication Date: September 16, 2011
 Notes
Acquisition: Collected for University of Florida's Institutional Repository by the UFIR Self-Submittal tool. Submitted by Michael Conlon.
Publication Status: Published
 Record Information
Source Institution: University of Florida Institutional Repository
Holding Location: University of Florida
Rights Management: All rights reserved by the submitter.
System ID: IR00000580:00001

Downloads

This item is only available as the following downloads:

VIVO_Medicine_2.0 ( PDF )

VIVO_Medicine_2.0 ( PPTX )


Full Text

PAGE 1

VIVO: Data, Tools and Community for Research Discovery

PAGE 2

Learned a field, learned the scientific method, did science

PAGE 3

Science and Scientists

PAGE 6

PubMed adds 700,000 articles each year

PAGE 7

The Problems Got Hard

PAGE 8

Data Got Big (IDR Slide)

PAGE 9

Lots of Competitors 2010 Shanghai ranking of world universities http://en.wikipe dia.org/wiki/Aca demic_Ranking_o f_World_Universit ies

PAGE 11

How do we respond?

PAGE 13

The FANTOM Consortium & Riken Omics Science Center, The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature Genetics 41 553 562 (2009)

PAGE 14

Clinical Trial

PAGE 15

Collaboration

PAGE 16

Implementation Research

PAGE 17

Mentoring

PAGE 18

How can we know what is going on, build teams, solve problems?

PAGE 19

Research Discovery Research Discovery

PAGE 21

between them

PAGE 22

How can we create a world platform for research discovery?

PAGE 23

Data

PAGE 24

Tools

PAGE 25

Community

PAGE 26

VIVO: Data, Tools and Community

PAGE 27

VIVO is open standards and open linked data regarding science people, papers/products, funding, events/presentations, resources, projects/studies, data, concepts and the relationships between them VIVO is open source, community maintained software tools for research discovery and networking VIVO is a world community of collaborators scientists, implementers, developers

PAGE 28

Ontology Process

PAGE 29

Harvesting Data

PAGE 30

Simple tools for presentation, traversal, search

PAGE 31

Tools using linked open data

PAGE 32

ScienceMap Examine collections of publications for individuals, work groups, institutions

PAGE 33

processOrg < function( uri ){ x< xmlParse ( uri ) u< NULL name< xmlValue ( getNodeSet (x,"// rdfs:label ")[[1]] ) subs< getNodeSet (x,"//j.1:hasSubOrganization") if(length(subs)==0) list(name= name,subs =NULL) else { for( i in 1:length(subs)){ sub.uri< getURI ( xmlAttrs (subs[[ i ]])["resource"]) u< c( u,processOrg (sub.uri)) } list(name= name,subs =u) } } VIVO produces both HTML and RDF Software reads VIVO RDF and displays

PAGE 34

Augmenting data

PAGE 35

VIVO Searchlight

PAGE 36

This figure at right displays 2 or more Researcher Networking websites. The idea that institutions don't work together and that biomedical research is conducted in silos is not true. Researchers, even when separated by great distances, are in fact willing to work together, and this visualization demonstrates that they often do. Contact: Nick Benik ( nbenik@gmail.com ), Harvard Medical School, Boston, MA. URL: http://xcite.hackerceo.org/VIVOviz Inter institutional Collaboration Explorer

PAGE 37

CTSAs

PAGE 38

USDA USDA

PAGE 39

APA

PAGE 40

China

PAGE 42

How can you get involved? Join us at http://vivoweb.org

PAGE 43

Photo Credits 2. Jackson Laboratory scientist http://www.jax.org/news/images/pressimages/300dpi_images/coleman/coleman1960.jpg 3. Biochemistry at Stanford. From the Stanford Biochemistry web site. 5. Francis Collins. From the NIH web site. 7. Courtesy of UF Health Science Center News and Communications 14. http://apod.nasa.gov/apod/ap080225.html 17. Institut Pasteur Korea Conducts Special 'IPK Life Science Mentoring' Program http://ip korea.org 20. Courtesy of Weill Cornell Medical College 21. Figure by M. Conlon 24. Bruckner Building Supply web site. http://brucknernyc.com/our products/in the yard/ 25. First annual VIVO Conference. https://picasaweb.google.com/110849244647388519713/FirstAnnualVIVONationalConference2010?authkey=Gv1sRgCP6K8LDBpOrKLg#5512757 184 241893154 38. Abraham Lincoln Building of the Unites States Agricultural Library. http://en.wikipedia.org/wiki/File:United_States_National_Agricultural_Library.jpg 40. VIVO map by M. Conlon 41. Second annual VIVO conference. Photographs by M. Conlon 42. The VIVO team outside the Gaylord during the great DC quake of 2011. 8/22/2011. Photograph courtesy of Michelle Issing


University of Florida Home Page
© 2004 - 2011 University of Florida George A. Smathers Libraries.
All rights reserved.

Acceptable Use, Copyright, and Disclaimer Statement
Powered by SobekCM